SGI™ GenomeCluster™ Administrator's Guide
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SGI™ GenomeCluster™ Administrator's Guide
Document Number: 007-4370-001
Front Matter
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List of Figures
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List of Tables
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Table of Contents
About This Guide
Related Publications and Web Sites
Obtaining Publications
Conventions
Reader Comments
1.
Introduction
Terminology
Assumptions
Contents of the SGI GenomeCluster Release
Space Requirements
2.
CT-BLAST
Invoking and Using CT-BLAST
CT-BLAST Options
CT-BLAST Arguments
Configuring the Code
3.
Topology
4.
Verify the Installation
What confidence Verifies
Using the confidence Script
5.
Troubleshooting
No rsh/rcp Access
PBS Jobs Fail to Start
Cannot Submit Jobs for PBS as root
Getting PBS State Information
Root Access for LSF
PCP Errors
Queue Priorities/Nice and PCP
NFS Version Defaults to 2
Index